USMLE - Chapter 1 - Biochemistry
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Chromatin Structure Overview to Histone Deacetylation6Topics
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Nucleoside and Nucleotide Basics to Base Pairing and DNA Stability5Topics
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Introduction to Nucleotide Synthesis Inhibition to Broad-Spectrum Inhibitors and CPS Enzymes5Topics
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Purine Metabolism and Salvage Pathways to Genetic Code: Commaless and Universal6Topics
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DNA Replication Basics to Detailed Lagging Strand Synthesis7Topics
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DNA Repair: Nonhomologous End Joining to DNA Repair: Mismatch Repair5Topics
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Introns vs Exons: Basic Definitions to Visualizing Alternative Splicing and Protein Diversity4Topics
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tRNA Structure Overview to mRNA Stop Codons6Topics
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Introduction to DNA Mutations to Lac Operon Gene Expression States8Topics
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Cilia Structure: Motile Cilia and Basal Body to K+ Pump Inhibition6Topics
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Page 1 — Eukaryotic Gene Overview to Page 1 — RNA Processing: Splicing & Fate8Topics
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Osteogenesis Imperfecta: Genetic Basis to Menkes Disease6Topics
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Eukaryotic RNA Polymerases: Types to Splicing Diagram: Lariat & Mature mRNA7Topics
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Flow Cytometry: Basics and Applications to ELISA: Principle and Uses4Topics
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Protein Synthesis: Initiation Phase to Posttranslational Modifications: Chaperone Proteins6Topics
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Karyotyping: Principles and Applications to Molecular Cloning: Process and Applications4Topics
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Cell Cycle Phases and Regulation to p53 and Apoptosis Induction7Topics
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Introduction to Imprinting Disorders to Visualizing Normal vs. Mutated Chromosomes6Topics
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Rough Endoplasmic Reticulum Functions to Specific Vesicular Trafficking Proteins7Topics
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Autosomal Dominant Inheritance to Pedigree Chart Symbols6Topics
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Peroxisome Functions to Drugs Affecting Microtubules5Topics
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Polyunsaturated Essential Fatty Acids to Water-Soluble Vitamins: Deficiencies and Coenzyme Functions5Topics
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Collagen Introduction and Type I to Collagen Synthesis: Maturation and Fibril Formation6Topics
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Vitamin B7 (Biotin): Function and Deficiency to Vitamin B9 (Folate): Deficiency, Causes, and Prevention3Topics
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Elastin: Structure and Composition to PCR Cycle: Elongation and Repetition8Topics
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Elastin: Structure and Composition
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Elastin Cross-linking and α1-Antitrypsin Deficiency
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Marfan Syndrome: Genetics and Physical Manifestations
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Marfan Cardiovascular Complications & Homocystinuria Overview
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Differentiating Marfan Syndrome and Homocystinuria
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Introduction to PCR: Amplifying DNA
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PCR Cycle: Denaturation and Annealing
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PCR Cycle: Elongation and Repetition
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Elastin: Structure and Composition
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Ethanol Metabolism Overview to Pharmacological Interventions in Alcohol Metabolism5Topics
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CRISPR to Interpreting Southern Blot Results5Topics
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Key Metabolic Locations to Glucose Breakdown and NADPH Production4Topics
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Transgenic Strategies in Mice to Epistasis and Aneuploidy7Topics
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Pyruvate Dehydrogenase Deficiency to The TCA Cycle (Krebs Cycle)3Topics
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Genetic Terms: Dominant Negative & Linkage Disequilibrium to Conditions for Hardy-Weinberg Equilibrium7Topics
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ETC Overview to Fatty Acids in Gluconeogenesis9Topics
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Autosomal Dominant Disorders to CFTR Channel Function Diagram11Topics
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Autosomal Dominant Disorders
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Autosomal Recessive Disorders
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Cystic Fibrosis: Genetics
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Cystic Fibrosis: CFTR Defect
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CFTR Dysfunction and Mucus Thickening
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Cystic Fibrosis: Diagnosis
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CF Pulmonary Complications
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CF Gastrointestinal and Reproductive Complications
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CF Treatment: Mucus Clearance and Inflammation
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CFTR Modulators in Treatment
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CFTR Channel Function Diagram
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Autosomal Dominant Disorders
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Phenylketonuria: Basic Defect and BH4 Deficiency to Alkaptonuria7Topics
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X-linked Recessive Diseases Introduction to Myotonic Dystrophy6Topics
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Fatty Acid Synthesis Overview to Medium-Chain Acyl-CoA Dehydrogenase Deficiency4Topics
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Mitochondrial Diseases: MELAS & MERRF to Trinucleotide Repeat Diseases: Fragile X & Friedreich Ataxia8Topics
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Mitochondrial Diseases: MELAS & MERRF
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Leber Hereditary Optic Neuropathy
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Rett Syndrome Characteristics
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Fragile X Syndrome: Genetics & Premutation
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Fragile X Syndrome: Full Mutation Features
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Trinucleotide Repeat Diseases: Huntington
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Trinucleotide Repeat Diseases: Myotonic Dystrophy
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Trinucleotide Repeat Diseases: Fragile X & Friedreich Ataxia
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Mitochondrial Diseases: MELAS & MERRF
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Hepatic Ketone Body Synthesis to Adipocyte Metabolism: Fed State4Topics
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Autosomal Trisomies & Down Syndrome Overview to Second Trimester Screening & NIPT8Topics
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Metabolic Fuel Use: Initial Exercise to Starvation After Day 3 and Stored Energy Depletion7Topics
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Metabolic Fuel Use: Initial Exercise
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Metabolic Fuel Use: Longer Exercise and Caloric Values
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Fasting and Starvation: Introduction and Fed State
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Fasting and Starvation: Between Meals
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Starvation Days 1-3: Fuel Shifts
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Starvation Days 1-3: Gluconeogenesis and RBCs
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Starvation After Day 3 and Stored Energy Depletion
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Metabolic Fuel Use: Initial Exercise
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Genetic Disorders: Chromosomes 3-7 to Williams Syndrome6Topics
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Dietary Lipid Absorption and Chylomicron Entry to IDL, LDL Formation, and Uptake4Topics
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Vitamin A: Functions and Forms to Vitamin B1: Beriberi Forms7Topics
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Vitamin B2: Function and Deficiency to Vitamin B6 Deficiency Symptoms7Topics
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Vitamin B12: Name, Function, and Sources to Vitamin C: Excess and Toxicity7Topics
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Vitamin D Introduction and Function to Vitamin E Deficiency and Excess Effects6Topics
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Vitamin K Function to Marasmus: Characteristics and Visuals7Topics
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Enzyme Terminology: Kinase & Phosphorylase to Rate-Determining Enzymes: Lipid Metabolism7Topics
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Enzyme Terminology: Kinase & Phosphorylase
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Enzyme Terminology: Phosphatase, Dehydrogenase, Hydroxylase
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Enzyme Terminology: Carboxylase, Mutase, Synthase/Synthetase
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Rate-Determining Enzymes: Glycolysis, Gluconeogenesis, TCA Cycle
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Rate-Determining Enzymes: Glycogenesis, Glycogenolysis, HMP Shunt
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Rate-Determining Enzymes: Nucleotide Synthesis, Urea Cycle
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Rate-Determining Enzymes: Lipid Metabolism
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Enzyme Terminology: Kinase & Phosphorylase
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ATP Production Pathways to Hexokinase vs Glucokinase: Kinetics & Regulation5Topics
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Glycolysis Net Reaction to PDC: α-Ketoglutarate & Arsenic7Topics
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Introduction to Pentose Phosphate Pathway to G6PD Deficiency: Biochemical Mechanism of Oxidative Stress7Topics
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Essential Fructosuria to Galactose Metabolism Pathway & Summary6Topics
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Sorbitol Pathway and Diabetic Complications to Acidic and Basic Amino Acids6Topics
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Urea Cycle Introduction to Hyperammonemia Treatment5Topics
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Ornithine Transcarbamylase Deficiency to Catecholamine Synthesis and Degradation5Topics
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Homocystinuria: Genetic Causes to Methylmalonic Acidemia: Deficiency & Metabolism6Topics
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Glucagon to Glycogen Disorders and Enzymes6Topics
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Introduction to Glycogen Storage Diseases to McArdle Disease (Type V)6Topics
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Lysosomal Storage Diseases Intro & Tay-Sachs to Lysosomal Storage Disease Pathway6Topics
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Key Enzymes in Lipid Transport - Part 1 to Major Apolipoproteins - Part 25Topics
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Lipoprotein Functions: Chylomicron & VLDL to Familial Dyslipidemias: Dysbetalipoproteinemia & Hypertriglyceridemia5Topics
Hepatic Ketone Body Synthesis to Adipocyte Metabolism: Fed State
Content August 26, 2025
Ketone Body Production in the Liver
In the liver, fatty acids and amino acids are metabolized to acetoacetate and β-hydroxybutyrate (to be used in muscle and brain).
In prolonged starvation and diabetic ketoacidosis, oxaloacetate is depleted for gluconeogenesis. With chronic alcohol overuse, high NADH state leads to accumulation of oxaloacetate (downregulated TCA cycle), shunting it to malate.
#boundingbox
Ketone Body Characteristics and Utilization
Ketone bodies include acetone, acetoacetate, and β-hydroxybutyrate. Acetone is responsible for the fruity odor often detected on the breath.
A urine test for ketones can detect acetoacetate, but not β-hydroxybutyrate. It’s important to note that red blood cells, or RBCs, cannot utilize ketone bodies; they strictly rely on glucose for energy.
HMG-CoA lyase is crucial for ketone body production, while HMG-CoA reductase is involved in cholesterol synthesis.
#boundingbox
Fasted vs Fed State: Adipocyte Metabolism in Fasted State
In the fasted state, adipocytes play a crucial role in providing energy. Hormones like epinephrine and glucagon stimulate the breakdown of triglycerides.
This process begins with epinephrine and glucagon activating adenylate cyclase, which converts ATP to cAMP. cAMP then activates Protein Kinase A, which phosphorylates and activates Hormone-Sensitive Lipase, or HSL.
Activated HSL, or HSL-P, hydrolyzes triglycerides (TG) into free fatty acids (FFA) and glycerol. These FFAs and glycerol are then released into the blood to be used by other tissues for energy.
#boundingbox
Fasted vs Fed State: Adipocyte Metabolism in Fed State
In contrast, during the fed state, the body is in an anabolic mode, storing excess energy. Insulin plays a central role in this process.
When glucose levels are high after a meal, insulin is released. Insulin promotes the uptake of glucose into adipocytes. Inside the adipocyte, glucose is converted to DHAP, or dihydroxyacetone phosphate, and then to Glycerol 3-P.
Simultaneously, lipoprotein lipase, or LPL, which is activated by Apo C-II, breaks down triglycerides from circulating lipoproteins. The resulting free fatty acids are taken up by the adipocyte.
These free fatty acids, along with Glycerol 3-P, are then re-esterified to form new triglycerides (TG) for storage within the adipocyte.
#boundingbox
Topics Covered:
- Hepatic Ketone Body Synthesis
- Ketone Body Properties and Usage
- Adipocyte Metabolism: Fasted State
- Adipocyte Metabolism: Fed State