USMLE - Chapter 2 - Immunology
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Primary Lymphoid Organs to Lymph Node Structural Diagram7Topics
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Introduction to Lymphatic Drainage to Lymph Node Palpability and Right Lymphatic Duct6Topics
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Spleen Structure Overview to Thymus-Related Conditions6Topics
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Components and Mechanism of Immunity to Understanding Immune Privilege4Topics
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MHC I and II: Introduction and Loci to DQ8, DR3, DR49Topics
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Functions of Natural Killer Cells to Major Functions of T Cells3Topics
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T Cell Development: Bone Marrow & Thymus to Regulatory T Cells and Autoimmunity6Topics
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T-cell Activation: Antigen Presentation to B-cell Activation: Co-stimulation, Class Switching, and Maturation4Topics
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Antibody Structure and Function to Antibody Diversity and Specificity4Topics
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Introduction to Immunoglobulin Isotypes to Thymus-Dependent Antigens7Topics
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Introduction to Complement System to Convergence and MAC Formation9Topics
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Introduction to Complement System
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Complement Activation Pathways
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Functions of Complement Components (Part 1)
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Functions of Complement Components (Part 2) & Inhibitors
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Overview of Complement Pathways Diagram
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Detail of Classic Pathway
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Detail of Lectin Pathway
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Detail of Alternative Pathway
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Convergence and MAC Formation
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Introduction to Complement System
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Early Complement Deficiencies to PNH: Hemolysis & Thrombosis4Topics
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Interleukin-1: Macrophage Secretion and Acute Response to IL-10 and IL-13: Immune Regulation and IgE Production7Topics
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Interleukin-1: Macrophage Secretion and Acute Response
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IL-6 and TNF-alpha: Inflammation and Systemic Effects
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IL-8 and IL-12: Neutrophil Recruitment and Th1 Differentiation
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IL-2 and IL-3: T Cell Growth and Bone Marrow Support
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Interferon-gamma: Th1 Response and Macrophage Activation
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IL-4 and IL-5: Th2 Response and Antibody Production
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IL-10 and IL-13: Immune Regulation and IgE Production
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Interleukin-1: Macrophage Secretion and Acute Response
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Respiratory Burst Introduction to Interferons Clinical Use & Side Effects5Topics
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T Cell Surface Proteins to Examples of Passive and Active Immunity4Topics
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Live Attenuated Vaccines: Description to mRNA Vaccine8Topics
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Live Attenuated Vaccines: Description
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Live Attenuated Vaccines: Pros, Cons, Examples
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Killed/Inactivated Vaccines: Description & Pros/Cons
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Killed/Inactivated Vaccines: Examples
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Subunit, Recombinant, Polysaccharide, Conjugate Vaccines: Description & Pros/Cons
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Subunit, Recombinant, Polysaccharide, Conjugate Vaccines: Examples
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Toxoid Vaccine
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mRNA Vaccine
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Live Attenuated Vaccines: Description
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Overview of Hypersensitivity Types to Type II: Cellular Dysfunction & Clinical Examples6Topics
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Type III Hypersensitivity: Mechanism & Examples to Type IV Hypersensitivity: Examples & Tests5Topics
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Allergic and Anaphylactic Transfusion Reactions to Delayed Hemolytic Transfusion Reaction5Topics
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Autoantibodies in Neuromuscular and Systemic Diseases to Autoantibodies in Metabolic, Hematologic, and Renal Disorders5Topics
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Bruton's Agammaglobulinemia to Chronic Mucocutaneous Candidiasis7Topics
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Severe Combined Immunodeficiency (SCID) to Chronic Granulomatous Disease7Topics
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Intro to Immunodeficiency & T-Cell Bacterial Infections to Parasitic Infections & Key Deficiency Note5Topics
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Hyperacute Transplant Rejection to Histology of Transplant Rejection5Topics
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Immunosuppressants: Definition and Risks to Sirolimus & Basiliximab: Clinical Aspects5Topics
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Azathioprine to Immunotherapy: Interleukin-2 and Interferons6Topics
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TNF-α Inhibitors: Adalimumab & Infliximab to Omalizumab & Palivizumab: Allergic & Viral7Topics
Intro to Immunodeficiency & T-Cell Bacterial Infections to Parasitic Infections & Key Deficiency Note
Content August 26, 2025
Infections in Immunodeficiency
This table summarizes common infections associated with different types of immunodeficiencies.
Bacterial Infections with T-Cell Deficiency
For bacterial infections, a deficiency in T-cells is often associated with Sepsis.
Bacterial Infections with B-Cell Deficiency
B-cell deficiencies often lead to infections with encapsulated bacteria. A helpful mnemonic for these is SHINE my SKIS:
- Pseudomonas aeruginosa
- Streptococcus pneumoniae
- Haemophilus influenzae type b
- Neisseria meningitidis
- Escherichia coli
- Salmonella
- Klebsiella pneumoniae, group B
- Streptococcus
Bacterial Infections with Granulocyte Deficiency
Granulocyte deficiencies are associated with “Some Bacteria Produce No Serious granules” including:
- Staphylococcus
- Burkholderia cepacia
- Pseudomonas aeruginosa
- Nocardia
- Serratia
Bacterial Infections with Complement Deficiency
Complement deficiencies can involve encapsulated species with early complement deficiencies, or Neisseria with late complement (C5-C9) deficiencies.
Viral Infections in Immunodeficiency
For viral infections, T-cell deficiencies are associated with CMV, EBV, JC virus, VZV, and chronic infection with respiratory or GI viruses.
B-cell deficiencies are linked to Enteroviral encephalitis and poliovirus, where live vaccines are contraindicated.
Granulocyte and Complement deficiencies are generally not applicable for viral infections in this context.
Fungal and Parasitic Infections in Immunodeficiency
For fungal and parasitic infections, T-cell deficiencies are associated with Candida (local), PCP (Pneumocystis pneumonia), and Cryptococcus.
B-cell deficiencies are linked to GI giardiasis (no IgA).
Granulocyte deficiencies are associated with Candida (systemic), Aspergillus, and Mucor.
Key Note on B-cell and T-cell Deficiencies
It’s important to note that B-cell deficiencies tend to produce recurrent bacterial infections, whereas T-cell deficiencies produce more fungal and viral infections.
Topics Covered:
- Intro to Immunodeficiency & T-Cell Bacterial Infections
- B-Cell Deficiency and Encapsulated Bacteria
- Bacterial Infections: Granulocyte & Complement Deficiencies
- Viral Infections in Immunodeficiency
- Fungal
- Parasitic Infections & Key Deficiency Note